FAQ

1. How can I perform some debug logging within a code block?

   You can simply import the logging module within a code block. For example:

   linenos:

   tools:

   default: cores: 2 mem: cores * 3 rules:

   • if: True execute: |

     import logging log = logging.getLogger(__name__) log.debug(f”Here’s what the entity looks like: {entity}”)

2. How can I import custom libraries or code?

   As long as the code is available within Galaxy’s virtualenv or the python path, it can be imported like any other package. For example:

   linenos:

   tools:

   default: cores: 2 mem: cores * 3 rules:

   • if: True execute: |

     import my_custom_module my_custom_module.my_func()